High-Throughput Sequencing Course

The Department of Biostatistics and Bioinformatics will again offer a summer High Throughput Sequencing Course from July 5th to August 9th, 2018 at Duke University.  Genomics technologies are advancing at an exponential rate, and the ability to run genomic experiments and analyze the resulting data is a critical skill set for future researchers in biology and medicine. Due to the complexity of the genome and the vast quantities of data generated per experiment, making sense of genomic data poses unique statistical and computational challenges. As part of the National Institutes of Health (NIH) Big Data to Knowledge (BD2K) initiative, the Department of Biostatistics and Bioinformatics, together with faculty from the Duke Center for Genomic and Computational Biology, was again funded to host a 6-week summer course on High Throughput Sequencing (HTS). Our goal is to teach the next generation of scientists the biological,  statistical, computational and informatics knowledge for implementing a well-designed genomics experiment.

Topics covered in the summer course include:

  • Introduction to molecular biology and HTS
  • Laboratory sessions generating and preparing RNA for HTS
  • Data munging, analysis and visualization in R
  • Statistical concepts for experimental design
  • Hypothesis testing and sample size calculations
  • Unsupervised and supervised statistical learning
  • Multiple testing, missing data, pathway and meta-analysis
  • Pipelines for HTS analysis using the Unix shell and R/Bioconductor
  • Data standards and informatics resources for HTS
To Apply:

As of April 27, 2018, this course is now currently full. Future applications will be waitlisted.

Applicants seeking admission must submit the online application form and provide two letters of recommendation. The recommendations should be written by someone qualified to testify to your capacity for graduate work. The recommendation form is also an online form.

  • Tuition is free to all participants. 
  • Class is held from 9:00am - 4:00pm.  Lunch break 11:45 - 1:45
  • Course Schedule 
    Week Days
    Week 1: July 5-6 Thursday-Friday
    Week 2: July 9-13 Monday - Friday
    Week 3: July 16-19 Monday - Thursday
    Week 4:July 23- 26 Monday - Thursday
    Week 5: July 30 - August 2 Monday - Thursday
    Week 6: August 6 - 9 Monday - Thursday
    For more detailed information about the course

FAQ's

Questions? 

 If you have additional questions, please contact the course coordinator at: htscourse@duke.edu 

Course Flyer

Course Instructors