CANCELED: Data Analysis for 10x Visium Spatial Transcriptomics Data

March 23, 2023
10:00 am to 12:00 pm
11110 Hock Plaza

Event sponsored by:

Biostatistics and Bioinformatics
Computational Biology and Bioinformatics (CBB)
Duke Center for Applied Genomics and Precision Medicine
Duke Center for Genomic and Computational Biology (GCB)
School of Medicine (SOM)

Contact:

Franklin, Monica

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Speaker:

Mengyi (Miko) Liu
As spatial transcriptomics becomes a more prevalent tool in cancer, neurology studies and more, do you wonder how to analyze the data to make sense of the biology? This workshop includes three hands-on sessions (2 hours each), that will: • Introduce the 10x Visium platform: experimental procedures, applications, advantage & disadvantage compared to other technologies • Teach you step-by-step the analysis for Visium data: preprocessing, clustering, how to use Loupe browser • Other downstream analysis: integration with single-cell data, using deconvolution tools to find cell types and cell-cell interactions After the workshop, you'll know how to approach a new Visium dataset when you want to analyze one.

Computational Biology Workshop