CANCELED: Data Analysis for 10x Visium Spatial Transcriptomics Data

March 23, 2023
10:00 am to 12:00 pm
11110 Hock Plaza

Event sponsored by:

Biostatistics and Bioinformatics
Computational Biology and Bioinformatics (CBB)
Duke Center for Applied Genomics and Precision Medicine
Duke Center for Genomic and Computational Biology (GCB)
School of Medicine (SOM)


Franklin, Monica



Mengyi (Miko) Liu
As spatial transcriptomics becomes a more prevalent tool in cancer, neurology studies and more, do you wonder how to analyze the data to make sense of the biology? This workshop includes three hands-on sessions (2 hours each), that will: • Introduce the 10x Visium platform: experimental procedures, applications, advantage & disadvantage compared to other technologies • Teach you step-by-step the analysis for Visium data: preprocessing, clustering, how to use Loupe browser • Other downstream analysis: integration with single-cell data, using deconvolution tools to find cell types and cell-cell interactions After the workshop, you'll know how to approach a new Visium dataset when you want to analyze one.

Computational Biology Workshop